You should be able to isolate into two groups any leads which have continuity with one another. The starting circuit is likely to isolate to two leads, the running circuit may have two or more leads that show continuity. If the running circuit has more than two leads, you will need to determine how those leads are to be used for voltage or speed changes.
Avoid splicing motor power cables when ever possible. Ideally, motor power cables should run continuous between the drive and motor terminals. The most common reason for splicing is to incorporate high-flex cable for continuous flexing applications.
If you are confused by me saying that the current flows from positive to negative, that just happens to be a historical convention. People like Benjamin Franklin, who helped figure out the mystery of electricity back in the 18th century, believed it was a flow of positive charges, so it flowed from positive to negative. We call this idea conventional current and still use it to this day in things like Fleming Left-Hand Rule.
The PWM Drive (pulse-width modulated drive) to motor power conductors are typically the most intense noise source in a system. Proper implementation of shielding, grounding, splicing, and treatment of excess cable is essential to reducing noise in your system.